species:   Scscl
pid:       PID1578
parent:    Ssc-milR-54
paralog:   
locus:     NW_001820815.1:677906-678000
matures:   ['GCAGGGUUUACAUGAUUGCCUUC', 'UUGUAAUUGUGGUCAUCCUCGUCC']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820815.1:677906-678000

0 out of bounds
5 alignments
5 proper strand
5 stranded perfect matches

                            ***********************    ***************                         
GGGGGCUAGGGCAGGGUUUACAUGAUUGCCUUCGCAGGGGGGGUUCGGGCCGGUAGGCCUUUUGGGGUUGUAAUUGUGGUCAUCCUCGUCCACUA
........(((((((((...(((((((((..((.((((........(((((....))))))))).))..)))))))))...))))).))))....
----------GCAGGGUUUACAUGAUUGCCUUC-------------------------------------------------------------- l=23 a=0 c
-------------------------------------------------------------------UUGUAAUUGUGGUCAUCCUCGUCC---- l=24 a=0 c*
-------------------------------------------UUCGGGCCGGUAGGCCUUUUGG------------------------------ l=22 a=3 ma
-------------------------------------------------------------------UUGUAAUUGUGGUCAUCCUCGUCC---- l=24 a=0 ma*

-------------------------------------------UUCGGGCCGGUAGGCCUUUUGG------------------------------ l=22 a=3 (ma)
--------------------------------------------UCGGGCCGGUAGGCCUUUUGG------------------------------ l=21 a=1 
--------------------------------------------UCGGGCCGGUAGGCCUUUUGGGGU--------------------------- l=24 a=1 

mb-00010
ax-1001111
ku-01
ss-111111101010
fn-111
